Nucleic Acids Research

Editorial

Editorial
Nucl. Acids Res. 2008 36: 6945-6947; doi:10.1093/nar/gkn997 [Extract] [FREE Full Text] [Print PDF][Screen PDF]  

Chemistry and Synthetic Biology

Get checked abstract Georges Lahoud, Victor Timoshchuk, Alexandre Lebedev, Khalil Arar, Ya-Ming Hou, and Howard Gamper

Properties of pseudo-complementary DNA substituted with weakly pairing analogs of guanine or cytosine
Nucleic Acids Research Advance Access published on November 5, 2008
Nucl. Acids Res. 2008 36: 6999-7008; doi:10.1093/nar/gkn797 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Jozef Salon, Jiansheng Jiang, Jia Sheng, Oksana O. Gerlits, and Zhen Huang

Derivatization of DNAs with selenium at 6-position of guanine for function and crystal structure studies
Nucleic Acids Research Advance Access published on November 5, 2008
Nucl. Acids Res. 2008 36: 7009-7018; doi:10.1093/nar/gkn843 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Computational Biology

Get checked abstract Yao Chi Chen and Carmay Lim

Common physical basis of macromolecule-binding sites in proteins
Nucleic Acids Research Advance Access published on November 6, 2008
Nucl. Acids Res. 2008 36: 7078-7087; doi:10.1093/nar/gkn868 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Gene regulation, Chromatin and Epigenetics

Get checked abstract Olga Kyrchanova, Darya Chetverina, Oksana Maksimenko, Andrey Kullyev, and Pavel Georgiev

Orientation-dependent interaction between Drosophila insulators is a property of this class of regulatory elements
Nucleic Acids Research Advance Access published on November 5, 2008
Nucl. Acids Res. 2008 36: 7019-7028; doi:10.1093/nar/gkn781 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Laura V. Papp, Junning Wang, Derek Kennedy, Didier Boucher, Yan Zhang, Vadim N. Gladyshev, Ravindra N. Singh, and Kum Kum Khanna

Functional characterization of alternatively spliced human SECISBP2 transcript variants
Nucleic Acids Research Advance Access published on November 12, 2008
Nucl. Acids Res. 2008 36: 7192-7206; doi:10.1093/nar/gkn829 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Jonathan D. Turner, Laetitia P. L. Pelascini, Joana A. Macedo, and Claude P. Muller

Highly individual methylation patterns of alternative glucocorticoid receptor promoters suggest individualized epigenetic regulatory mechanisms
Nucleic Acids Research Advance Access published on November 12, 2008
Nucl. Acids Res. 2008 36: 7207-7218; doi:10.1093/nar/gkn897 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Genomics

Get checked abstract Enhu Li, Claudia I. Reich, and Gary J. Olsen

A whole-genome approach to identifying protein binding sites: promoters in Methanocaldococcus (Methanococcus) jannaschii
Nucleic Acids Research Advance Access published on November 3, 2008
Nucl. Acids Res. 2008 36: 6948-6958; doi:10.1093/nar/gkm499 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Dawn M. Simon and Steven Zimmerly

A diversity of uncharacterized reverse transcriptases in bacteria
Nucleic Acids Research Advance Access published on November 12, 2008
Nucl. Acids Res. 2008 36: 7219-7229; doi:10.1093/nar/gkn867 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Molecular Biology

Get checked abstract Jean-Philippe Gagné, Maxim Isabelle, Ken Sin Lo, Sylvie Bourassa, Michael J. Hendzel, Valina L. Dawson, Ted M. Dawson, and Guy G. Poirier

Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes
Nucleic Acids Research Advance Access published on November 3, 2008
Nucl. Acids Res. 2008 36: 6959-6976; doi:10.1093/nar/gkn771 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Daniel Michalowski, Rebecca Chitima-Matsiga, Daniel M. Held, and Donald H. Burke

Novel bimodular DNA aptamers with guanosine quadruplexes inhibit phylogenetically diverse HIV-1 reverse transcriptases
Nucleic Acids Research Advance Access published on November 7, 2008
Nucl. Acids Res. 2008 36: 7124-7135; doi:10.1093/nar/gkn891 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Mingang Xu, John R. McCarrey, and Norman B. Hecht

A cytoplasmic variant of the KH-type splicing regulatory protein serves as a decay-promoting factor for phosphoglycerate kinase 2 mRNA in murine male germ cells
Nucleic Acids Research Advance Access published on November 10, 2008
Nucl. Acids Res. 2008 36: 7157-7167; doi:10.1093/nar/gkn800 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Matteo Rossi, Oleg N. Demidov, Carl W. Anderson, Ettore Appella, and Sharlyn J. Mazur

Induction of PPM1D following DNA-damaging treatments through a conserved p53 response element coincides with a shift in the use of transcription initiation sites
Nucleic Acids Research Advance Access published on November 10, 2008
Nucl. Acids Res. 2008 36: 7168-7180; doi:10.1093/nar/gkn888 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Rajita A. Karran and Katalin A. Hudak

Depurination within the intergenic region of Brome mosaic virus RNA3 inhibits viral replication in vitro and in vivo
Nucleic Acids Research Advance Access published on November 12, 2008
Nucl. Acids Res. 2008 36: 7230-7239; doi:10.1093/nar/gkn896 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Nucleic Acid Enzymes

Get checked abstract Jackson A. Buss, Yuji Kimura, and Piero R. Bianco

RecG interacts directly with SSB: implications for stalled replication fork regression
Nucleic Acids Research Advance Access published on November 5, 2008
Nucl. Acids Res. 2008 36: 7029-7042; doi:10.1093/nar/gkn795 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract P. Lesbats, M. Métifiot, C. Calmels, S. Baranova, G. Nevinsky, M. L. Andreola, and V. Parissi

In vitro initial attachment of HIV-1 integrase to viral ends: control of the DNA specific interaction by the oligomerization state
Nucleic Acids Research Advance Access published on November 5, 2008
Nucl. Acids Res. 2008 36: 7043-7058; doi:10.1093/nar/gkn796 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Igor D. Vilfan, Andrea Candelli, Susanne Hage, Antti P. Aalto, Minna M. Poranen, Dennis H. Bamford, and Nynke H. Dekker

Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate
Nucleic Acids Research Advance Access published on November 5, 2008
Nucl. Acids Res. 2008 36: 7059-7067; doi:10.1093/nar/gkn836 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Laura A. Christensen, Hong Wang, Bennett Van Houten, and Karen M. Vasquez

Efficient processing of TFO-directed psoralen DNA interstrand crosslinks by the UvrABC nuclease
Nucleic Acids Research Advance Access published on November 7, 2008
Nucl. Acids Res. 2008 36: 7136-7145; doi:10.1093/nar/gkn880 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Femi J. Olorunniji, Jiuya He, Sandra V.C.T. Wenwieser, Martin R. Boocock, and W. Marshall Stark

Synapsis and catalysis by activated Tn3 resolvase mutants
Nucleic Acids Research Advance Access published on November 10, 2008
Nucl. Acids Res. 2008 36: 7181-7191; doi:10.1093/nar/gkn885 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

RNA

Get checked abstract Jan C. Schöning, Corinna Streitner, Irmtraud M. Meyer, Yahong Gao, and Dorothee Staiger

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis
Nucleic Acids Research Advance Access published on November 4, 2008
Nucl. Acids Res. 2008 36: 6977-6987; doi:10.1093/nar/gkn847 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Mark A. Ditzler, David Rueda, Jingjie Mo, Kristina Håkansson, and Nils G. Walter

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation
Nucleic Acids Research Advance Access published on November 6, 2008
Nucl. Acids Res. 2008 36: 7088-7099; doi:10.1093/nar/gkn871 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Kumiko Ui-Tei, Yuki Naito, Kenji Nishi, Aya Juni, and Kaoru Saigo

Thermodynamic stability and Watson–Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect
Nucleic Acids Research Advance Access published on November 6, 2008
Nucl. Acids Res. 2008 36: 7100-7109; doi:10.1093/nar/gkn902 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Julia P. Swiercz, Hindra, Jan Bobek, Henry J. Haiser, Christina Di Berardo, Brian Tjaden, and Marie A. Elliot

Small non-coding RNAs in Streptomyces coelicolor
Nucleic Acids Research Advance Access published on November 12, 2008
Nucl. Acids Res. 2008 36: 7240-7251; doi:10.1093/nar/gkn898 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Structural Biology

Get checked abstract Norimichi Nomura, Yayoi Nomura, Django Sussman, Daniel Klein, and Barry L. Stoddard

Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His–Cys box homing endonucleases
Nucleic Acids Research Advance Access published on November 4, 2008
Nucl. Acids Res. 2008 36: 6988-6998; doi:10.1093/nar/gkn846 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Malgorzata M. Duszczyk, Katia Zanier, and Michael Sattler

A NMR strategy to unambiguously distinguish nucleic acid hairpin and duplex conformations applied to a Xist RNA A-repeat
Nucleic Acids Research Advance Access published on November 5, 2008
Nucl. Acids Res. 2008 36: 7068-7077; doi:10.1093/nar/gkn776 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Yong-Gui Gao, Hiroaki Suzuki, Hiroshi Itou, Yong Zhou, Yoshikazu Tanaka, Masaaki Wachi, Nobuhisa Watanabe, Isao Tanaka, and Min Yao

Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
Nucleic Acids Research Advance Access published on November 6, 2008
Nucl. Acids Res. 2008 36: 7110-7123; doi:10.1093/nar/gkn827 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Isabelle Lebars, Pierre Legrand, Ahissan Aimé, Noël Pinaud, Sébastien Fribourg, and Carmelo Di Primo

Exploring TAR–RNA aptamer loop–loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance
Nucleic Acids Research Advance Access published on November 7, 2008
Nucl. Acids Res. 2008 36: 7146-7156; doi:10.1093/nar/gkn831 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Methods Online

Get checked abstract Kelly J. Duffy, Jack Littrell, Adam Locke, Stephanie L. Sherman, and Michael Olivier

A novel procedure for genotyping of single nucleotide polymorphisms in trisomy with genomic DNA and the invader assay
Nucleic Acids Research Advance Access published on October 21, 2008
Nucl. Acids Res. 2008 36: e145; doi:10.1093/nar/gkn736 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Gretja Schnell, William L. Ince, and Ronald Swanstrom

Identification and recovery of minor HIV-1 variants using the heteroduplex tracking assay and biotinylated probes
Nucleic Acids Research Advance Access published on October 23, 2008
Nucl. Acids Res. 2008 36: e146; doi:10.1093/nar/gkn713 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Haruo Suzuki, Masahiro Sota, Celeste J. Brown, and Eva M. Top

Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes
Nucleic Acids Research Advance Access published on October 25, 2008
Nucl. Acids Res. 2008 36: e147; doi:10.1093/nar/gkn753 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Anja O. Paatero, Hilkka Turakainen, Lotta J. Happonen, Cia Olsson, Tiina Palomäki, Maria I. Pajunen, Xiaojuan Meng, Timo Otonkoski, Timo Tuuri, Charles Berry, Nirav Malani, Mikko J. Frilander, Frederic D. Bushman, and Harri Savilahti

Bacteriophage Mu integration in yeast and mammalian genomes
Nucleic Acids Research Advance Access published on October 25, 2008
Nucl. Acids Res. 2008 36: e148; doi:10.1093/nar/gkn801 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Lei Wang, Yan-Zhong Luo, Lan Zhang, Xiao-Ming Jiao, Ming-Bo Wang, and Yun-Liu Fan

Rolling circle amplification-mediated hairpin RNA (RMHR) library construction in plants
Nucleic Acids Research Advance Access published on October 31, 2008
Nucl. Acids Res. 2008 36: e149; doi:10.1093/nar/gkn715 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Diane P. Genereux, Winslow C. Johnson, Alice F. Burden, Reinhard Stöger, and Charles D. Laird

Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies
Nucleic Acids Research Advance Access published on November 4, 2008
Nucl. Acids Res. 2008 36: e150; doi:10.1093/nar/gkn691 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract R. van der Geize, W. de Jong, G. I. Hessels, A. W. F. Grommen, A. A. C. Jacobs, and L. Dijkhuizen

A novel method to generate unmarked gene deletions in the intracellular pathogen Rhodococcus equi using 5-fluorocytosine conditional lethality
Nucleic Acids Research Advance Access published on November 4, 2008
Nucl. Acids Res. 2008 36: e151; doi:10.1093/nar/gkn811 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Front-Matter/Back-Matter

Nucleic Acids Research: VOLUME 36 ISSUE 22 2008
Nucl. Acids Res. 2008 36: i; doi:10.1093/nar/gkn1032 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Nucleic Acids Research
Nucl. Acids Res. 2008 36: ii; doi:10.1093/nar/gkn1031 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Subscriptions
Nucl. Acids Res. 2008 36: iii; doi:10.1093/nar/gkn1033 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.