Nucleic Acids Research

Articles:

Michiel Wels, Christof Francke, Robert Kerkhoven, Michiel Kleerebezem, and Roland J. Siezen

Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups
Nucl. Acids Res. 2006 34: 1947-1958; doi:10.1093/nar/gkl138 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Andrew G. Cridge, Louise L. Major, Alhad A. Mahagaonkar, Elizabeth S. Poole, Leif A. Isaksson, and Warren P. Tate

Comparison of characteristics and function of translation termination signals between and within prokaryotic and eukaryotic organisms
Nucl. Acids Res. 2006 34: 1959-1973; doi:10.1093/nar/gkl074 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Alfred Cioffi, Tomara J. Fleury, and Arnold Stein

Aspects of large-scale chromatin structures in mouse liver nuclei can be predicted from the DNA sequence
Nucl. Acids Res. 2006 34: 1974-1981; doi:10.1093/nar/gkl078 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Sara N. Richter, Elisabetta Leo, Giulia Giaretta, Barbara Gatto, L. Mark Fisher, and Manlio Palumbo

Clerocidin interacts with the cleavage complex of Streptococcus pneumoniae topoisomerase IV to induce selective irreversible DNA damage
Nucl. Acids Res. 2006 34: 1982-1991; doi:10.1093/nar/gkl127 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Agnieszka Obarska, Alex Blundell, Marcin Feder, Stepánka Vejsadová, Eva Sisáková, Marie Weiserová, Janusz M. Bujnicki, and Keith Firman

Structural model for the multisubunit Type IC restriction–modification DNA methyltransferase M.EcoR124I in complex with DNA
Nucl. Acids Res. 2006 34: 1992-2005; doi:10.1093/nar/gkl132 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Jakob T. Nielsen, Khalil Arar, and Michael Petersen

NMR solution structures of LNA (locked nucleic acid) modified quadruplexes
Nucl. Acids Res. 2006 34: 2006-2014; doi:10.1093/nar/gkl144 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Ruud J. W. Schoemaker and Alexander P. Gultyaev

Computer simulation of chaperone effects of Archaeal C/D box sRNA binding on rRNA folding
Nucl. Acids Res. 2006 34: 2015-2026; doi:10.1093/nar/gkl154 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Elena Laletina, Dmitri Graifer, Alexey Malygin, Anton Ivanov, Ivan Shatsky, and Galina Karpova

Proteins surrounding hairpin IIIe of the hepatitis C virus internal ribosome entry site on the human 40S ribosomal subunit
Nucl. Acids Res. 2006 34: 2027-2036; doi:10.1093/nar/gkl155 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Gil Tae Hwang and Floyd E. Romesberg

Substituent effects on the pairing and polymerase recognition of simple unnatural base pairs
Nucl. Acids Res. 2006 34: 2037-2045; doi:10.1093/nar/gkl049 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Wei Xie, Peng Jiang, Lin Miao, Ying Zhao, Zhai Zhimin, Li Qing, Wei-guo Zhu, and Mian Wu

Novel link between E2F1 and Smac/DIABLO: proapoptotic Smac/DIABLO is transcriptionally upregulated by E2F1
Nucl. Acids Res. 2006 34: 2046-2055; doi:10.1093/nar/gkl150 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Marie Guillet, Patricia Auffret Van Der Kemp, and Serge Boiteux

dUTPase activity is critical to maintain genetic stability in Saccharomyces cerevisiae
Nucl. Acids Res. 2006 34: 2056-2066; doi:10.1093/nar/gkl139 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ranajoy Chattopadhyay, Lee Wiederhold, Bartosz Szczesny, Istvan Boldogh, Tapas K. Hazra, Tadahide Izumi, and Sankar Mitra

Identification and characterization of mitochondrial abasic (AP)-endonuclease in mammalian cells
Nucl. Acids Res. 2006 34: 2067-2076; doi:10.1093/nar/gkl177 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Sandra Peiró, Maria Escrivà, Isabel Puig, Maria José Barberà, Natàlia Dave, Nicolás Herranz, Maria Jesús Larriba, Minna Takkunen, Clara Francí, Alberto Muñoz, Ismo Virtanen, Josep Baulida, and Antonio García de Herreros

Snail1 transcriptional repressor binds to its own promoter and controls its expression
Nucl. Acids Res. 2006 34: 2077-2084; doi:10.1093/nar/gkl141 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Narcis Fernandez-Fuentes, Baldomero Oliva, and András Fiser

A supersecondary structure library and search algorithm for modeling loops in protein structures
Nucl. Acids Res. 2006 34: 2085-2097; doi:10.1093/nar/gkl156 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Anna Valenti, Alessandra Napoli, Maria Carmina Ferrara, Marc Nadal, Mosè Rossi, and Maria Ciaramella

Selective degradation of reverse gyrase and DNA fragmentation induced by alkylating agent in the archaeon Sulfolobus solfataricus
Nucl. Acids Res. 2006 34: 2098-2108; doi:10.1093/nar/gkl115 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Marina Roberti, Francesco Bruni, Paola Loguercio Polosa, Maria Nicola Gadaleta, and Palmiro Cantatore

The Drosophila termination factor DmTTF regulates in vivo mitochondrial transcription
Nucl. Acids Res. 2006 34: 2109-2116; doi:10.1093/nar/gkl181 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Pascale Hazel, Gary N Parkinson, and Stephen Neidle

Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures
Nucl. Acids Res. 2006 34: 2117-2127; doi:10.1093/nar/gkl182 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Tadeusz Janas, Teresa Janas, and Michael Yarus

Specific RNA binding to ordered phospholipid bilayers
Nucl. Acids Res. 2006 34: 2128-2136; doi:10.1093/nar/gkl220 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Xiaomei Wu, Lei Zhu, Jie Guo, Da-Yong Zhang, and Kui Lin

Prediction of yeast protein–protein interaction network: insights from the Gene Ontology and annotations
Nucl. Acids Res. 2006 34: 2137-2150; doi:10.1093/nar/gkl219 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Corrigendum:

Bernd Schimanski, Jens Brandenburg, Tu Ngoc Nguyen, Melissa Jo Caimano, and Arthur Günzl

A TFIIB-like protein is indispensable for spliced leader RNA gene transcription in Trypanosoma brucei
Nucl. Acids Res. 2006 34: 2151; doi:10.1093/nar/gkl256 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Methods Online:

Zonglin Hu, Aixia Zhang, Gisela Storz, Susan Gottesman, and Stephen H. Leppla

An antibody-based microarray assay for small RNA detection
Nucl. Acids Res. 2006 34: e52; doi:10.1093/nar/gkl142 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Kwan-Ho Chung, Christopher C. Hart, Sarmad Al-Bassam, Adam Avery, Jennifer Taylor, Paresh D. Patel, Anne B. Vojtek, and David L. Turner

Polycistronic RNA polymerase II expression vectors for RNA interference based on BIC/miR-155
Nucl. Acids Res. 2006 34: e53; doi:10.1093/nar/gkl143 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Eun-Young Kim, Jennifer Stanton, Rafael A. Vega, Kevin J. Kunstman, Chad A. Mirkin, and Steven M. Wolinsky

A real-time PCR-based method for determining the surface coverage of thiol-capped oligonucleotides bound onto gold nanoparticles
Nucl. Acids Res. 2006 34: e54; doi:10.1093/nar/gkl147 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Stuart Macgregor, Peter M. Visscher, and Grant Montgomery

Analysis of pooled DNA samples on high density arrays without prior knowledge of differential hybridization rates
Nucl. Acids Res. 2006 34: e55; doi:10.1093/nar/gkl136 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

A. Callegaro, R. Spinelli, L. Beltrame, S. Bicciato, L. Caristina, S. Censuales, G. De Bellis, and C. Battaglia

Algorithm for automatic genotype calling of single nucleotide polymorphisms using the full course of TaqMan real-time data
Nucl. Acids Res. 2006 34: e56; doi:10.1093/nar/gkl185 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

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